Bioinformatics Scientist Portfolio

About Me

I specialize in bridging the gap between complex biological data and actionable insights. My work focuses on genomic sequencing, phylogenetics. Currently, I am exploring the intersection of machine learning and structural biology.

Technical Stack

R / Bioconductor Python Docker & Singularity

Selected Projects

Comparative Genomic analysis

compare max 10 fasta file to analyze

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Cancer Genomics - NGS Pipeline

Browser-based NGS ChIP-seq & ATAC-seq analysis pipeline for cancer genomics research.

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Multi-Omics Integration Tool

Browser-based integration of gene expression, mutation, and copy number data with MFA & iCluster.

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QSAR Modelling Tool

Upload ligand activity data to fit QSAR models, visualize molecular descriptors, and export reports.

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DockTool - Protein-Ligand Docking

Upload receptor & ligand, configure the docking box, run multi-seed docking, and analyze poses with 3D visualization plus PDF/HTML reports.

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MD Simulation Workflow Builder

Step-by-step molecular dynamics workflow: topology, solvation, ions, minimization, NVT/NPT, production MD, analysis, and paper-ready reports.

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RNA-seq Analysis Tool

Upload raw reads & reference genome to run the alignment & expression pipeline: FastQC, trimming, Rsubread alignment, featureCounts, DESeq2, WGCNA & more.

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Useful Tools

Browser-based bioinformatics tools powered by WebAssembly. No installation required, all processing happens locally in your browser.

Note : Dear Users, Kindly use small sample file.

SAM/BAM Viewer

View and analyze alignment files using samtools

FASTA/FASTQ Tools

Process sequences with seqtk

VCF Analyzer

Analyze variant files with bcftools

BED Tools

Genome arithmetic with bedtools

FASTQ Quality

Quality control with fastp

Sequence Aligner

Align sequences with minimap2

Genome Ribbon

Visualize structural variants and alignments

NCBI FASTA Analyzer

Find Mutation & Their Plot, CSV Data & Log File

Academic Plagiarism Checker

Check academic documents for plagiarism and originality

Sequencing Verification

Verify company FASTA results against your expected PCR product

Sequence File Converter

Convert and analyze FASTA, FASTQ, AB1, GenBank, and CSV sequence files

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Sample Test Datasets

Download these sample files to test the bioinformatics tools below.

Raw Reads (FASTQ)

SRR5924196_1.fastq.gz (77 MB)

Use this with Seqtk or Fastp to test sequence manipulation and quality control.

Download FASTQ

Aligned Reads (BAM)

SRR5924196_1.fastq.gz.subread.BAM (183 MB)

Use this with the SAM/BAM Viewer to test alignment viewing and statistics generation.

Download BAM

Variants (VCF)

SRR5924196_1.fastq.gz.subread.BAM.indel.vcf (244 KB)

Use this with the VCF Analyzer to test variant viewing and querying.

Download VCF

Note: Since these files are large, they are hosted externally. Download them to your computer first, then upload them to the specific tool below that you want to test!