I specialize in bridging the gap between complex biological data and actionable insights. My work focuses on genomic sequencing, phylogenetics. Currently, I am exploring the intersection of machine learning and structural biology.
Browser-based NGS ChIP-seq & ATAC-seq analysis pipeline for cancer genomics research.
View Project Tool →Browser-based integration of gene expression, mutation, and copy number data with MFA & iCluster.
View Project Tool →Upload ligand activity data to fit QSAR models, visualize molecular descriptors, and export reports.
View Project Tool →Upload receptor & ligand, configure the docking box, run multi-seed docking, and analyze poses with 3D visualization plus PDF/HTML reports.
View Project Tool →Step-by-step molecular dynamics workflow: topology, solvation, ions, minimization, NVT/NPT, production MD, analysis, and paper-ready reports.
View Project Tool →Upload raw reads & reference genome to run the alignment & expression pipeline: FastQC, trimming, Rsubread alignment, featureCounts, DESeq2, WGCNA & more.
View Project Tool →Browser-based bioinformatics tools powered by WebAssembly. No installation required, all processing happens locally in your browser.
Note : Dear Users, Kindly use small sample file.
View and analyze alignment files using samtools
Process sequences with seqtk
Analyze variant files with bcftools
Genome arithmetic with bedtools
Quality control with fastp
Align sequences with minimap2
Visualize structural variants and alignments
Find Mutation & Their Plot, CSV Data & Log File
Paste plain text and convert it to a valid FASTA file in the browser
Check academic documents for plagiarism and originality
Verify company FASTA results against your expected PCR product
Convert and analyze FASTA, FASTQ, AB1, GenBank, and CSV sequence files
Simulate, fit and analyse biochemical reaction networks in the browser
Download these sample files to test the bioinformatics tools below.
SRR5924196_1.fastq.gz (77 MB)
Use this with Seqtk or Fastp to test sequence manipulation and quality control.
Download FASTQSRR5924196_1.fastq.gz.subread.BAM (183 MB)
Use this with the SAM/BAM Viewer to test alignment viewing and statistics generation.
Download BAMSRR5924196_1.fastq.gz.subread.BAM.indel.vcf (244 KB)
Use this with the VCF Analyzer to test variant viewing and querying.
Download VCFExploring the intersection of high-performance computing, molecular biology, and artificial intelligence.
Verification: DNA sequencing result matches your expected PCR product. This tool compares sequences using alignment analysis, calculates identity and coverage, detects mismatches, insertions, and deletions, and provides a clear verification verdict with supporting evidence.
QSAR-modelling
Metagenomic analysis-construction of microbial community taxonomic tree
Interested in collaboration or have questions about my work?
ashifraza4142@gmail.com
